Musilová, Zuzana & O. Rican, K.Janko & J.Novák. 2008. "Molecular phylogeny and biogeography of the Neotropical cichlid fish tribe Cichlasomatini (Teleostei: Cichlidae: Cichlasomatinae)". Molecular Phylogenetics and Evolution. (n. 46); 659-672 (crc01835)
Musilová, Zuzana & Ingo Schindler & Wolfgang Staeck. 2009. "Description of Andinoacara stalsbergi sp. n. (Teleostei: Cichlidae: Cichlasomatini) from Pacific coastal rivers in Peru, and annotations on the phylogeny of the genus". Vertebrate Zoology. 59 (2) 2009, pp. 131-141 (crc01881)
Musilová, Zuzana & Oldrich Rican & J. Novak. 2009. "Phylogeny of the Neotropical cichlid fish tribe Cichlasomatini (Teleostei: Cichlidae) based on morphological and molecular data, with the description of a new genus". Journal of Zoological Systematics and Evolutionary Research. v. 47 (3): pp. 234–247 (crc01825) (abstract)
Musilová, Zuzana. 2010. "Blaupunktbuntbarsche (Gattung Andinoacara) aus Kolumbien und weiteren südamerikanischen Ländern". Deutsche Cichliden Gesellschaft- Informationen. v. 41(n. 5), pp. 98–108 (crc04787)
Musilová, Zuzana & L. Kalous & M. Petrtyl & P. Chaloupkova. 2013. "Cichlid Fishes in the Angolan Headwaters Region: Molecular Evidence of the Ichthyofaunal Contact between the Cuanza and Okavango-Zambezi Systems". Plos One. v. 8(n. 5), pp. 1-10 (crc05215) (abstract)
Musilová, Zuzana & A. Indermaur, A.R. Bitja Nyom, R. Tropek, C. Martin & U.K. Schliewen. 2014. "Persistence of Stomatepia mongo, an Endemic Cichlid Fish of the Barombi Mbo Crater Lake, Southwestern Cameroon, with Notes on Its Life History and Behavior". Copeia. v. 14(n. 3), pp. 556-560. DOI: 10.1643/CI-14-021 (crc06473) (abstract)
Musilová, Zuzana & Oldřich Říčan, Štěpánka Říčanová, Petr Janšta, Ondřej Gahura & Jindřich Novák. 2015. "Phylogeny and historical biogeography of trans-Andean cichlid fishes (Teleostei: Cichlidae)". Vertebrate Zoology. v. 65(n. 3), pp. 333-350 (crc06962) (abstract)
Musilová, Zuzana & A. Indermaur, A.R. Bitja‐Nyom, D. Omelchenko, M. Kłodawska, L. Albergati, K. Remišová, W. Salzburger. 2019. "Evolution of the visual sensory system in cichlid fishes from crater lake Barombi Mbo in Cameroon". Molecular ecology. v. 28(n. 23), pp. 5010-5031. DOI: 10.1111/mec.15217 (crc09526) (abstract)